Material and Method: The expression levels of mir-126, mir-182, and mir-486-5p were analyzed in lung, oral cavity, laryngeal, and hypopharyngeal SCCs in 40 patients, using quantitative real-time polymerase chain reaction.
Results: The findings showed that lung, oral cavity, laryngeal, and hypopharyngeal SCCs have distinct mir-126 and mir-486-5p expression profiles. It was also observed that mir-126 and mir-486-5p expression levels were highly specific to the tumor localization.
Conclusion: These findings highlighted that SCCs originating from different anatomic localizations have different miRNA expression profiles. miRNA expression analysis can be used to predict the primary localizations of those SCCs.
The epithelium overlying the upper aerodigestive tract is continuous with the respiratory epithelium, so carcinogens such as tobacco products may show similar carcinogenic processes along the upper aerodigestive and respiratory tracts at the same time. Therefore, a second primary tumor may develop in the lungs of patients with HNSCC [5]. In addition, the lung is the most common site of visceral metastases in these patients [6]. Histopathological examination often does not provide enough insight to suggest the exact localization of the primary anatomic region of the tumor. Therefore, differential diagnosis between the second primary lung tumor and a lung metastasis is challenging in patients with HNSCC. Although SCCs that arise from different anatomic localization have a similar histopathological appearance, tumors may differ in terms of genetic and epigenetic features, such as the miRNA expression profile, which are specific to the anatomic localization [7-10].
miRNAs, which are single-stranded non-protein-coding RNAs generally 1824 nucleotides long, are capable of controlling gene expression at the post-transcriptional level [11]. Studies have revealed that miRNAs in humans have an essential function in regulating various biological pathways, such as the cell cycle, proliferation, development, and growth [12]. Dysregulation in the expression profile of miRNAs disrupts biofeedback and gene expression control mechanisms, which may lead to the development of cancer [13]. Several studies have revealed that miRNAs show different expression profiles according to tissue and tumor types [14,15]. This highly specific expression profile can be used for diagnostic purposes, such as the discrimination of primary cancers and their metastases [15].
Research based on the integrated analysis of The Cancer Genome Atlas (TCGA) database data has revealed that mir-126, mir-182 and mir-486-5p were the consistently and significantly dysregulated miRNAs in lung cancer [16-19]. Research has also indicated that profile analysis of this miRNA expression could differentiate lung carcinoma patients from healthy tissue or patients with lung metastasis of tumor [20-25]. In this study, mir-126, mir-486-5p and mir-182 expression levels were analyzed in lung, oral cavity, hypopharynx, and laryngeal SCC, and evaluations were made of the association of tumor anatomic localization with the mir-126, mir-486-5p, and mir-182 expression profile.
Table I: Clinicopathological characteristics of the patients in this study.
Selection of miRNA
The selection of miRNA was based on a literature review
of the research based on the integrated analysis of the
Cancer Genome Atlas (TCGA) database data of miRNA
expression profiles in lung SCCs [16-25]. To identify
miRNAs with a predictive potential to differentiate lung
SCCs and HNSCCs, the research focused on miRNAs that
play a critical role in lung carcinogenesis, lung tissue, or
tumor specificity. miRNAs accepted as oncoMİR (e.g.,
miR-21, mir-30) and miRNAs whose expression levels were highly associated with squamous epithelia-containing
tissues, such as mir-205, mir-31 and mir-203, were not
selected [26-29]. Three miRNAs (mir-126, mir-182 and
mir-486) that could differentiate lung carcinoma patients
from healthy tissue or patients with lung metastasis were
selected for the study.
RNA Extraction from Tissue Samples and Quantitative
Real-Time Polymerase Chain Reaction (PCR) of miRNAs
The slides of each patient were re-examined to determine
the areas where tumor cells were most dense. Tumors
and corresponding non-neoplastic squamous epithelium
were manually micro-dissected from 5μm- thick paraffin
sections and placed in 1.5 mL microcentrifuge tubes.
After deparaffinization and rehydration, total RNA was
isolated using Recover All Total Nucleic Acid Isolation
Kit for FFPE tissue in accordance with the manufacturers
instructions. The RNA concentration was measured with
a NanoDrop 1000 Spectrophotometer (Thermo Scientific,
USA). Ten nanograms of total RNA were reversetranscribed
for RNU6b, mir-126, mir-182, and mir-486-
5p using the Taqman MicroRna Reverse Transcription
Kit. Reverse transcription was performed under the
following conditions: 16°C for 30 min, 42°C for 30 min,
and 85°C for 5 min with a sample volume of 15 μl. The
real-time PCR was performed in the 7500 Real-Time PCR
system (ABI, Applied Biosystems, USA) using TaqMan
MicroRNA Assays and TaqMan Universal PCR Master
Mix with a sample volume of 20 μl (7.67 μL nuclease-free
water, 10 μl TaqMan Universal PCR Master Mix, 1 μl
TaqMan Small RNA Assay, and 1.33 μl product from the
reverse transcription reaction). All reagents used in this
study were purchased from Thermo Fisher Scientific Inc.
(Thermo Scientific/Ambion, USA). All the samples were
run in triplicate, and no-template controls were tested
alongside actual samples in each experiment. After initial
enzyme activation at 95°C for 10 min and 40 cycles of 15
s denaturation at 95°C were performed, 1 min annealing
and extension at 60°C was carried out. Raw RT-qPCR data
were obtained using Applied Biosystems7500 Real-Time
PCR Software version 2.0, and the cycle threshold (Ct)
values were used to analyze the expression levels of targeted
miRNAs. The expression levels were normalized to the
RNU6B (endogenous control) expression. The miRNA
relative amounts were determined using the comparative
Ct method (ΔΔCT = ΔCT [the tumor tissue sample] ΔCT
[the corresponding non-neoplastic squamous epithelium]).
The fold changes in the expression of the three miRNAs
between each tumor sample and its corresponding nonneoplastic
squamous epithelium were determined using
the the 2ΔΔCT method.
Statistical Analysis
Data obtained in the study were analyzed statistically using
SPSS version 20.0 software. Fold changes for miRNAs
were expressed graphically and numerically. Comparisons
among primary localizations were performed for Log2
transformed miRNA expression levels using one-way
ANOVA and Tukeys honest significant difference tests
(Tukeys HSD). Individual and combined Receiver
Operator Characteristics (ROC) curve analyses for
miRNAs with significant differences among SCC groups
were performed to assess the diagnostic accuracy. The
statistical confidence level was set at 0.95 (α = 0.05). Post
hoc power analysis was performed for miRNA levels with
a statically insignificant difference using G*Power version
3.1.9.2. Differences in expression profiles of miR-126 and
mir-486-5p among groups were significant, with powers of
0.95 and 0.93, respectively
There were no statistically significant differences in the mir-126, mir-182 and mir-486-5p expression profiles between keratinizing type SCCs and non-keratinizing type SCCs in all anatomic localizations (p>0.05). The miRNA expression profiles in the lung SCCs were compared with the expression profiles in the oral cavity, laryngeal, and hypopharyngeal SCCs. The results are summarized in Table II. The findings showed that there were noticeably different expression levels for mir-126, mir-182, and mir- 486-5p between the lung SCCs and hypopharyngeal SCCs (p < 0.05); for mir-126, mir-182, and mir-486-5p between the lung SCCs and oral SCCs (p < 0.05); and for mir-126 between the lung SCCs and laryngeal SCCs (p < 0.05).
ROC curve analysis was performed to assess the value of these miRNA expression profiles as specific molecular signatures for anatomic localization. The area under the curves (AUC) for mir-126, mir-182, and mir-486-5p were 0.93, 0.84, and 0.95, respectively (p < 0.05). All three miRNAs had good discriminative power in differentiating lung SCCs from hypopharyngeal SCCs. The combination signatures of mir-126 and mir-486-5p showed better prediction than individual miRNA. The optimal cut-off values of mir-126 and mir-486-5p were 2.25 and 0.34, respectively. These findings showed that the combined expression profiles of mir-126 and mir-486-5p could distinguish lung SCCs from hypopharyngeal SCCs with 100% sensitivity and 100% specificity (Figure 2A).
mir-126 and mir-486-5p were differentially expressed between the lung SCCs and oral SCCs. ROC curve analysis indicated that these miRNA expression profiles were a significant discriminant factor between lung SCCs and oral SCCs. The AUCs for mir-126 and mir-486 were 0.93 and 0.96, respectively, and when combined, the AUC was 1.00 (p < 0.05). The optimal cut-off values of mir-126 and mir-486 were 2.17 and 0.11, respectively. In addition to the hypopharyngeal SCC, the combined expression profiles of mir-126 and mir-486 could distinguish lung SCCs from oral SCCs with 100% sensitivity and 100% specificity (Figure 2B).
Only mir-126 was differentially expressed between lung SCCs and laryngeal SCCs. ROC curve analyses revealed that the optimal cut-off value of mir-126 was 1.63, and mir-126 was sufficiently effective to differentiate between lung SCCs and laryngeal SCCs (AUC = 1.00) (Figure 2C). The laryngeal SCCs group included five glottic laryngeal SCC cases and four supraglottic laryngeal SCC cases that predominantly located in the epiglottis without false cord involvement. There were no statistically significant differences in the mir-126 expression profile between the supraglottic laryngeal SCCs and the glottic laryngeal SCCs cases. (p > 0.05).
Lung SCCs originate in the lower respiratory tract epithelium, and unlike the upper aerodigestive tract, this epithelium does not normally contain squamous cells. Long-term exposure to irritants causes epithelial changes in the bronchial epithelium, creating a reparative reaction that causes squamous metaplasia and epithelial dysplasia [34,35]. Lung SCCs develop from these metaplastic-dysplastic cells [34]. SCCs arising from keratinocytes or metaplastic cells often exhibit similar histological appearance under the light microscope.
Considering the differences in the developmental stages of these tumors, SCCs may differ in terms of genetic and epigenetic features. Many studies have shown that tumors with similar histological appearance originating from different anatomic localizations have genetic and epigenetic differences specific to the localization [8,10,34].
Studies have also emphasized that tumors carry specific genetic and epigenetic features to metastatic foci and the localization of tumors can be predicted by evaluating these properties [14,15]. In this study, the expression patterns of mir-126, mir-182 and mir-486-5p were analyzed in lung, oral cavity, hypopharyngeal, and laryngeal SCCs, which have been shown to be highly significant and consistently dysregulated miRNAs in lung cancer. The study findings revealed that the lung, oral cavity, hypopharyngeal, and laryngeal SCCs had distinct miRNA expression profiles. Munoz-Largacha et al. also showed that lung SCCs and HNSCCs had distinct miRNA expression profiles [10] in a study which demonstrated that 48 miRNAs were differentially expressed between lung SCCs and HNSCCs. They found mir-10a expression was greater (-3.5 to - 5.3- fold) in lung SCCs and miR-10b expression was greater (1.7-fold) in HNSCCs; the expression ratio of mir-10a to mir-10b had a strong predictive power of tumor anatomical site in the training and the validation data sets (AUC: 0.92- 0.98). They also stated that expression profile of several miRNA may be useful for discriminating between HNSCC and lung SCC. The fold change of mir-126, mir-182 and mir-486 between HNSCC and lung SCC were 1.63, 1.03 and 1.33, respectively, in their data sets. In addition to those findings, from the current study results it was observed that mir-126, mir-182, and mir-486-5p were differentially expressed between the lung SCCs and hypopharyngeal SCCs, mir-126 and mir-486-5p were differentially expressed between the lung SCCs and oral SCCs, and mir- 126 was differentially expressed between the lung SCCs and laryngeal SCCs. The most important findings of this study were that the expression profiles of mir-126 and mir-486- 5p were strongly correlated with tumor localization.
mir-126 has a role in the regulation of 81 genes such as MAPK1, VEGFA, PIK3CA, PIK3CD, AKT1, and STK1119. Target pathway prediction has shown that most of these genes are involved in the regulation of proliferation [36,37]. mir-126 plays an important role in lung tumorigenesis by influencing the PI3K/Akt pathway and MAPK signaling pathway via regulation of AKT1, PIK3CA, and MAPK1 [36,38]. Crawford et al. also observed that alteration of mir- 126 expression affected adhesion, and the migratory and invasive capacity of lung cancer, through Crk regulation [39]. Several studies have indicated that mir-126 is significantly downregulated miRNA in lung cancer [17,20,39]. The current study findings showed that although mir- 126 was downregulated in all SCC groups, the expression of mir-126 was significantly lower in lung SCCs than in other SCCs.
Studies have indicated that mir-126 is also an important biomarker in the diagnosis of lung cancer [17,20,21,38,39]. Song et al. revealed that combinations of mir-126, mir-182, and mir-205 have good accuracy in the prediction of lung carcinoma [21]. Zhu et al. and Sanfienzo et al. reported that analysis of serum and plasma miRNAs expression profiles, including mir-126, could distinguish lung carcinoma patients from healthy volunteers [22,40]. Furthermore, Barshack et al. compared the mir-126 expression profile of lung tumors and metastases of the tumors to the lungs, and observed that mir-126 expression was downregulated in primary lung tumor and expression analyses could distinguish primary lung tumor from lung metastases [20]. The current study findings showed that mir-126 expression profile was highly specific for tumor anatomic localization and analysis of expression levels proved to be a promising method with the potential to differentiate between lung SCCs and laryngeal SCCs (p < 0.0001, 95% CI).
mir-486-5p is another important miRNA, involved in lung tumorigenesis, which induces translation of numerous validated genes, such as PTEN, CDK4, ARHGAP, and PIK3R1 [36,37]. The interaction between mir-486-5p and these genes influences cell cycle progression, apoptosis, and the PI3K/Akt pathway [36,37]. Yu et al. showed that mir-486-5p inhibited the development and invasion of lung tumors through the repression of GAB2, while Wang et al. showed that the downregulation of miR- 486-5p contributed to the development of lung cancer by regulating ARHGAP5 [41,42]. Several studies have shown that mir-486-5p acts as a tumor suppressor and is one of the most significantly downregulated miRNAs in lung cancer [18,41,42]. mir-486-5p could also provide a diagnostic approach for detecting lung cancer [23,24]. In meta-analyses by Tian et al., it was indicated that mir-486 expression analyses of tissue, plasma, blood, and serum could provide a biomarker for lung cancer diagnosis [18,25]. In addition to this result, the current study findings suggested that mir-486-5p expression levels were also highly specific for tumor localization and mir486-5p has great potential to be a novel, sensitive, and reliable biomarker for differential diagnosis. It was determined that mir-486-5p was down-regulated in lung SCCs and laryngeal SCCs, and up-regulated in hypopharyngeal and oral cavity SCCs. The analysis of mir-486-5p expression profiles can differentiate lung SCCs from hypopharyngeal SCCs with 90% sensitivity and 100% specificity and can differentiate lung SCCs from oral SCCs with 80% sensitivity and 100% specificity. In addition, the combined expression profiles of mir-126 and mir-486-5p could distinguish lung SCCs from hypopharyngeal SCCs and oral SCCs with 100% sensitivity and 100% specificity.
mir-182 can affect 2105 genes and plays an important role in carcinogenesis in various cancer tissues [36,37]. It has been reported that the target genes of mir-182-5p are enriched in 42 KEGG pathways such as NSCLC, cell cycle, apoptosis, p53 signaling pathway, and Wnt signaling pathway [37]. Lou et al. analyzed the TCGA database and observed that mir-182 regulated 81 gene functions in lung SCCs by repressing these gene functions [19]. In addition, analyses of TCGA data have revealed that mir-182, whose over expression has been reported recently to be associated with overall poor survival in patients with lung SCC, was one of the most upregulated miRNAs in lung SCCs [19,43]. Compatible with this research, the current study results showed that mir-182 was upregulated in the oral, hypopharyngeal, laryngeal, and lung SCC.
The results of this study demonstrated that SCCs arising from different anatomic localizations in the oral, hypopharyngeal, laryngeal, and lung regions had mir-126 and mir486-5p expression profiles specific to the localization and these expression profiles were strongly associated with tumor localization. The weakest point of this study was the small sample size. Nevertheless, the findings of this study will provide a basis for further investigations into miRNA-based differential diagnosis. Further research of larger samples may help to clarify the diagnostic utility of these miRNAs as a predictive tool.
In conclusion, recent studies have revealed that the miRNAs expressed differentially between different tissue and tumor types and their highly specific expression profiles can be used for diagnosis through the classification of primary cancers and their metastases. The results of this study revealed that the SCCs arising from the oral, hypopharyngeal, laryngeal, and lung regions had distinct mir-126 and mir-486-5p expression profiles, and mir-126 and mir-486-5p expression analysis may provide potential biological markers for the prediction of the primary localization of SCCs.
ACKNOWLEDGMENTS
The authors would like to thank Aptullah Haholu for his
contribution to the histopathologic analyses.
CONFLICT of INTEREST
The authors declare that they have no conflict of interest.
FUNDING
This study was supported by the Gulhane Military Medical
Academy, Haydarpasa Training Hospital Epidemiology
Committee.
AUTHORSHIP CONTRIBUTIONS
Concept: GI, ZK, İY, Design: GI, ZK, İY, Data collection
or processing: GI, İY, EE, Analysis or Interpretation: GI,
İY, ET, Literature search: GI, ZK, İY, EE, Writing: GI,
Approval: GI, ZK, İY, EE, ET, DD, AG, ŞY.
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