Material and Method: A total of 50 confirmed lung adenocarcinoma cases were included. In all the 50 cases, ICC was performed for ALK protein expression by using the D5F3 clone on Ventana platform. On the basis of ALK protein expression on ICC, the cases were categorized as ALK positive (2+ or 3+ strong cytoplasmic granular positivity) or negative (negative or 1+ cytoplasmic granular positivity). FISH for detection of ALK gene rearrangement was performed in 7 ALK ICC positive cases and 7 ALK ICC negative cases using the Vysis ALK break apart FISH probe kit.
Results: Based on ICC, 7(14%) cases were ALK positive and 43(86%) were ALK negative. ALK gene rearrangements in lung adenocarcinoma were more commonly seen in non-smokers (31.25%) as compared to smokers (6.25%). Among the ALK-ICC positive cases, FISH demonstrated break apart signal in 5 cases (ALK- ICC positive); however, no break-apart signals were seen in 2 ALK-ICC positive and all the seven ALK-ICC negative cases.
Conclusion: Immunocytochemistry on cell- blocks using DF53 clone is a highly sensitive and specific method for the detection of ALK gene rearrangements in lung adenocarcinoma with a greater number of ALK positive cases being detected on ICC as compared to the ALK-FISH.
Anaplastic lymphoma kinase (ALK), is a tyrosine kinase receptor, encoded by the ALK gene. ALK gene rearrangements are seen in 1.9-6.8% cases of NSCLCs [6]. The most common genetic rearrangement involves the echinoderm microtubule associated protein-like 4 (EML4) and ALK leading to formation of the EML4-ALK fusion gene that encodes for a chimeric protein with intrinsic tyrosine kinase activity. However, fusion genes involving other partners have also been detected. Identification of the ALK gene rearrangement is a mandatory diagnostic test for NSCLC patients [7,8]. This is mainly owing to the availability of effective ALK-inhibitors like crizotinib, alectinib, and ceritinib, which lead to good therapeutic response and better five-year survival rates as compared to the standard chemotherapy regimens [9]. Currently, three methods are available for detecting ALK gene rearrangements: fluorescence in situ hybridization (FISH), immunohistochemistry (IHC) and real-time PCR (RTPCR). FISH has been considered the gold standard method for detecting ALK gene rearranged NSCLC. However, the recent guidelines recommend that IHC, using FDA approved antibodies, is an equivalent alternative for ALK testing [8]. Although ALK testing is frequently performed on histopathological tissues, testing using cytologic samples is sparsely documented. The present study was undertaken to detect ALK gene rearrangements by using immunocytochemistry (ICC) and the FISH technique on cell-blocks, in cases diagnosed as lung adenocarcinoma on cytology samples.
Direct and/or sediment smears were prepared from cytologic samples (both air-dried and 95% ethanol-fixed) and rest of the cytologic material was rinsed into a glass tube containing 1 ml of 1% ammonium oxalate for cellblock preparation. The air-dried smears were stained with May Grunwald Giemsa (MGG) and the wet-fixed smears with haematoxylin and eosin (H&E) and/or Papanicolaou stain. The cell-blocks were prepared using an already standardized plasma clot method. ICC was performed on the cell-blocks, wherever needed, to subtype the tumors using TTF1, p40, CK7 and Napsin A.
ALK IHC using D5F3 clone
The Ventana ALK (D5F3) CDx assay was used for the
detection of ALK protein expression as a surrogate marker
for ALK gene rearrangements. The strength of cytoplasmic
granular positivity was graded as 3+ (strong positivity in
>90% tumor cells); 2+ (moderate cytoplasmic granular
positivity in 20-90% tumor cells); 1+ faint cytoplasmic
positivity in <20% cells; and 0 (negative for cytoplasmic
positivity).
ALK gene rearrangement by FISH
FISH was performed for detection of ALK gene rearrangements
in ICC- positive and equal number of randomly
selected ICC- negative cases. FISH was performed
using the Vysis ALK break apart FISH probe kit (Abbott
Molecular). Fluorescence signals (ALK 5 probe (Spectrum
Green) and the ALK 3 probe (Spectrum Orange)) were
recorded after viewing under fluorescence microscope
(Olympus WX63 Epi-illumination fluorescence microscope).
At least 50 tumor cell nuclei were evaluated for
each case and the positivity was taken as nuclei showing
split signals or deleted signals (presence of single orange
signal) (Table I). A tumor was interpreted as negative if less than 5 out of 50 tumor cells (<5/50 or <10%) were positive.
A tumor was interpreted as positive if 25 cells out of 50
tumor cells (>25/50 or >50%) were positive. A tumor was
interpreted as equivocal if 5-25 cells (10 to 50%) were positive.
For equivocal cases, a second unbiased evaluation of
slide by another cytopathologist was performed, following
which both the first and second cell counts/readings were
added together and a final percentage was calculated for
100 cells. If the average percentage of the positive cells was
<15% (<15 positive nuclei/100 evaluated tumor nuclei), the
sample was interpreted as negative. However, if the average
percentage of the positive tumor cells was >15% (>15 positive
nuclei/100 tumor cell nuclei evaluated), the sample was
interpreted as positive.
Statistical Analysis
For data analysis, SPSS (version 22.0) software was used.
The Shapiro-Wilk test was applied to check the normality
of continuous data like age. For normally distributed
data, mean and SD were reported. Categorical variables
like gender, smoking status, pathologic diagnoses, stage,
etc. were reported as frequency and percentage. The
independent t-test was used to compare the mean of
normally distributed quantitative variables between two groups (ALK IHC positive and negative). The chi square/
Fishers Exact test was applied to find out any association
between categorical variables and the study groups. A p
value of < 0.05 was taken as significant.
Detection of ALK gene rearrangements by ICC
Seven (14%) cases showed cytoplasmic granular positivity
for ALK antibody (D5F3 clone). Based on the staining
intensity, 5 (71.4%) cases were categorized as 3+ ALK
positive and two (28.6%) cases were categorized as 2+
(Figure 2A-D).
Clinicopathologic parameters were compared amongst ALK positive and ALK negative groups on ICC. ALK gene rearrangements were more frequently seen in females (4/7 (57.1%) cases being ALK positive) as compared to males (3/7 (42.9%) cases being ALK positive); however, this difference was not found to be statistically significant (p=0.08). The mean age of the patients in the ALK positive group (56 years) as compared to that of ALK negative group (59 years) was also not statistically significant (p=0.6).
Out of 48 cases with known smoking status, 32 (66.6%) were smokers and 2/32 (6.25%) cases were ALK positive. Among smokers, 26 (81.2%) were males and 6 (18.7%) were females. Among 16 (33.3%) non-smokers, 5/16 (31.25%) were ALK positive. It was seen that non-smokers were significantly associated with ALK gene rearrangements (p=0.03). Furthermore, it was more commonly detected in females with non-smoking status; however, this was not statistically significant (p=0.08).
Pleural effusion was noted in 20 (41.7%) cases; however, the presence of pleural effusion was not found to be significantly associated with ALK gene rearrangements (p=0.10). ALK positivity was seen more commonly in cases reported as adenocarcinoma as compared to cases reported as NSCLC, favour adenocarcinoma; however, this was not statistically significant (p=0.36) (Table II). Furthermore, ALK gene rearrangements were seen in cases having focal solid and acinar (n=5; 71.4%), and papillary (n=2; 28.5%) architecture (Figure 1E,F).
In addition, EGFR gene mutational analysis was performed by real time polymerase chain reaction in 46 (92%) cases and no case in the ALK positive group showed known mutations in the exons 18, 19, 20 and 21 of EGFR gene, reiterating the mutually exclusive existence of these genetic alterations.
Two out of seven ALK positive cases received Crizotinib or Ceritinib. One patient had progression of the disease and the other one showed a partial response.
Detection of ALK gene rearrangements by FISH
FISH testing for ALK gene rearrangements using the Vysis
ALK break-apart FISH probe kit (Abbott Molecular) was
performed in a total of 14 randomly selected cases (7 ALK
ICC positive cases and 7 ALK ICC negative cases). ALK
rearrangements by the FISH technique could be detected
in 5/7 (71.4%) cases, which were positive on ALK ICC.
Among the ALK-FISH positive cases, the mean percentage
of ALK-FISH positive rearranged nuclei was 79.25% (range
67-91%). FISH positive cases showed presence of split
signal pattern (n=3) and combined 3 deletion and split
signal pattern (n=2) (Figure 3A-D). In addition, all the 7
ALK ICC negative cases were negative on ALK testing by
FISH, indicating a good concordance between ICC and
FISH (Figure 4A-C).
There are 4 methods for detecting these genetic rearrangements including immunohistochemical staining (IHC), fluorescence in situ hybridization (FISH), reverse transcriptase‐PCR (RT‐PCR) and next generation sequencing (NGS). All of these methods have their own advantages and disadvantages. FISH is considered as the gold standard for detecting ALK rearrangements, however, well-validated IHC has been accepted as an equivalent alternative [7,8]. NGS can detect all kinds of fusions, whereas, FISH and IHC provide no fusion specification and RT-PCR provides information only regarding EML4- ALK fusion [11].
In the present study, detection of ALK gene rearrangements in lung adenocarcinoma cases was carried out using ICC on cell-blocks. The mean age of the patients in our study is similar to that observed in the previous studies [12-15].
Lung adenocarcinoma is more common in smokers than in non-smokers. Similarly, in our study 66.6% patients were smokers and 33.3% were non-smokers. However, ALK gene rearrangements were seen more frequently in non-smokers (31.25%), which correlates well with some previous studies [10-15]. The tumors were more common in the right lung (n=35) in the present study, which is similar to a previous study [16,17]. Presence of pleural effusion was found to be higher in patients with ALK gene rearrangement as seen in the previous studies; however, this was not statistically significant [18,19]. There was no statistically significant difference between lung cancer stage and ALK gene rearrangements which is in agreement with the previous studies [20]. A thorough comparison of the present study with previously published studies for detection of ALK rearrangements is shown in the Table III [21-25]. The prevalence of ALK rearrangements using FISH and IHC observed in the present study is in concordance with other studies wherein the prevalence ranged from 3 to 14.9% and 4 to 15.4%, for FISH and IHC, respectively. The concordance rates of ALK IHC and ALK-FISH in the published literature are variable and range from 75-100% (Table III). The concordance rate between ICC and FISH in the present study was 66.7%.
Higher ALK positivity rates with immunochemistry can be explained by the fact that ALK IHC detects the ALK protein expression but not the genetic changes. Similarly, lower positivity rates of ALK-FISH on cell-blocks, can be due to the presence of yet unknown type of ALK rearrangement or genetic abnormalities other than ALK rearrangements, which may be missed on FISH. As FISH is considered the gold standard test, the results may indicate that ALKIHC had false-positive results. Similarly, a few authors have found that FISH can miss a good number of patients with ALK-EML4 rearrangements who might benefit from targeted ALK therapy, so they strongly recommended ALK-IHC [19,26]. When analysed alone with FISH, their cohort had 4 (7.8%) positive cases whereas the true incidence was 7 (13.7%) cases [19]. This can be because of extremely minimal splitting of red and green signals giving false negative results. However, rare ALK translocations that do not cause over expression of ALK protein may lead to negative IHC and positive FISH results.
CONFLICT of INTEREST
The authors declare no conflict of interest.
FUNDING
None
AUTHORSHIP CONTRIBUTIONS
Concept: PG, NG, MR, AR, Design: PG, NG, AR, Data
collection or processing: SR, PG, NG, MR, NS, Analysis
or Interpretation: SR, PG, NG, MR, NS, Literature search:
SR, PG, NG, NS, AR, Writing: SR, PG, NG, Approval: SR,
PG, NG, MR, NS, AR.
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